oxbow
oxbow copied to clipboard
Range query API
Partially implemented (some may already be implemented)
- [ ] alignments:
- [ ] sam.gz:
- [ ] tbi
- [ ] csi
- [ ] bam: bai/csi
- [x] bai
- [ ] tbi
- [ ] csi
- [ ] cram
- [ ] tbi
- [x] csi
- [ ] sam.gz:
- [ ] variants:
- [ ] vcf
- [x] tbi
- [ ] csi
- [ ] bcf
- [ ] tbi
- [x] csi
- [ ] vcf
- [ ] sequences: fasta, fastq
- [ ] fasta.gz
- [x] fai (fasta, uncompressed)
- [] gzi (compressed)
- [ ] fastq.gz
- [x] fai (fastq, uncompressed)
- [ ] gzi (compressed)
- [ ] fasta.gz
- [ ] interval feature
- [ ] bed.gz
- [ ] bedGraph.gz
- [ ] gtf.gz/gff.gz
- [ ] Arbitrary TSV files with tabix