Chado
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GMOD
the GMOD database schema
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Changes to Chado Installation that Karl O. Pinc suggested http://gmod.827538.n3.nabble.com/RFC-Chado-relase-v1-3-tp4048655p4048701.html - Do _not_ delete tables before installing. (If the...
I think there was some request for an organism_analysis linker table in the schema? We plan on creating one at HWG anyway. ``` -- ================================================ -- TABLE: organism_analysis -- ================================================...
Ontologies are increasingly borrowing terms from other ontologies and using the IDs from the source ontology, and the current tables of Chado make this difficult to represent. One example is...
Hello, @mpoelchau and myself have been discussing the behavior of storing GFF files for feature annotations via Tripal. We are considering a gene that perhaps has been annotated with GO...
Hello, I'm mapping out a module that would integrate drupal users with chado contacts. Part of that is I would like to assign users to different roles for different subsets...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Lacey Sanderson and Ethy Cannon need to represent germplasm (stock) with more than one contributed organism (e.g. interspecific crosses)....
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Requests by Ethy Cannon / Naama Menda / Steve Cannon http://gmod.827538.n3.nabble.com/Opening-up-comments-on-changes-to-Chado-tc4036098.html#a4039144 - feature_stock with a type_id is used to...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: http://gmod.827538.n3.nabble.com/Opening-up-comments-on-changes-to-Chado-td4036098.html#a4039024 All requests except for image tables were worked into the v1.3 release. The following are linker tables for...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Requested by Lukas Mueller & seconded by Sook Jung (v1.4) http://gmod.827538.n3.nabble.com/RFC-Chado-relase-v1-3-tp4048655p4048658.html - Add timestamps for creation time (maybe also...
The tmp_gff_load_cache table is a not-really-temporary table that the GFF3 bulk loader uses to keep track of feature names and IDs. To make database replication easier, it should have a...
