Chado
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GMOD
the GMOD database schema
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Requests by Andrew Farmer http://gmod.827538.n3.nabble.com/RFC-Chado-relase-v1-3-tp4048655p4048675.html - Add a biomaterial_project table (v1.4) - Stephen says (4/24/2015). because the biomaterial, protocol,...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Should this eimage table be pulled out into a new ‘image’ module with appropriate linking tables? Scott says: I’m...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: Indexes Suggested by Karl O. Pinc http://gmod.827538.n3.nabble.com/RFC-Chado-relase-v1-3-tp4048655p4048701.html New indexes on these tables - feature_relationship - featureloc - feature
I would like to attach a set of phenotype records to the study (project) that generated them, but don't want to use the nd_experiment table: `project --- nd_experiment_project --- nd_experiment...
This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc: http://gmod.827538.n3.nabble.com/An-alteranate-high-throughput-sequencing-chado-representation-tc4046238.html - Add a ‘type’ field to the analysis table. (v1.4) - Stephen says (1/14/2015). I like this. It...
sounds self explanatory The issue description is [this](http://gmod.827538.n3.nabble.com/RFC-Chado-relase-v1-3-tp4048655p4048701.html) which looks unrelated to me > > 4) Change 'feature.seqlen' to a bigint to accommodate longer sequences. Great. > One more thing...
http://gmod.827538.n3.nabble.com/Analysis-uniqename-td4049078.html >The suggestion was raised that there needs to be some sort of unique constraint on analysis. To be consistent the idea was proposed for adding a uniquename field to...
We are having a bit of trouble organizing controlled vocabularies in the CV and DB tables. The problem comes in with the "short name" (e.g. GO, SO, etc...) for the...
Hi, I'm working on setting up a new Chado database from scratch with minimum amount of hardcoding. feature_property.obo definitely is a great help for that. However, I noticed that all...
Hello all, We are working on a way to add additional information to a feature_cvterm association. We would like to specify an analysis_id for a feature_cvterm record. We would also...
