Chado
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GMOD
the GMOD database schema
Hi, Following the assembly of various genomes, now I have to propose dedicated visualization tools. I installed a Chado database, which is accessible with a dedicated user that I named...
group module
From the [google dock](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) The group schema will define groups of things. Here is the [group module discussion](http://www.gmod.org/wiki/Chado_Group_Module). >As per the discussion with Scott Cain, Stephen Ficklin, Lacey Sanderson, a...
Hello, In recent years, I have deployed Tripal-based websites (and so Chado) for different agronomical research projects. Both Chado and Tripal proved to be satisfactory tools. However, for our needs,...
In Tripal we often search for cvtermsynonyms using the `synonym` column and the `type_id` column. We can improve performance if we add an index for both of those columns
I wonder if moving the documentation for Chado into this repo via readthedocs would make documentation for chado more visible. Additionally, I think it would make it easier for contribution...
In Tripal we use a PR template to encourage us to submit all necessary information to make reviewing a PR as easy as possible. https://github.com/tripal/tripal/pull/850 The template should probably have...
https://github.com/GMOD/Chado/blob/1.4/chado/schemas/1.31-1.41/diff.sql I think that the 1.41 diff file should be converted to a flyway migration. I think that the best thing to do woudl be to then *delete this diff*...
At least for the sake of the PMC I propose we need a document about how to contribute documentation and schema changes to Chado. I propose we add 1. How...
noticed this on the feature index, index 5: https://laceysanderson.github.io/chado-docs/tables/feature.html looks like hte index is there and fine, but it gets reported as a null in schema spy here it is...