MindTheGap
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GATB
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
Hi, I'm running MindTheGap version 2.2.2 in the contig gap-filling mode. I gave it 28 threads to run off of and started it on May 27. I logged into my...
I have a problem with the result of MindTheGap. I simulated 1000 variants in chr15.fa including 524 insertions and 476 deletions with SURVIVOR and ART. I got the result with...
When I install MindeTheGap it produces " /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found", but I have no permission to install it on server. Is there any way to go forward?
Hi, I'm running MindTheGap in a cluster but it consumes up the space in my /home directory by writing a lot of trashme_* files. I'm using MindTheGap for 3k rice...
Hello, I ran MindTheGap on a high coverage (~200x) whole human genome data with a command like this: ./MindTheGap find -in S1_1.fastq.gz,S1_2.fastq.gz,S2_1.fastq.gz,S2_2.fastq.gz,...,S18_1.fastq.gz,S18_2.fastq.gz -ref human_g1k_v37.fasta -nb-cores 72 -max-memory 200000 -out SAMPLE...
