Lejzerowicz

Compilation error: zlib found but not working

4

## Expected Behavior Compiling the code using cmake ## Current Behavior Not compiling successfully *stdin:* ``` $ cmake -DCMAKE_BUILD_TYPE=RELEASE -DZLIB_LIBRARY=/home/flejzerowicz/softs/zlib-1.2.11/lib -DZLIB_INCLUDE_DIR=/home/flejzerowicz/softs/zlib-1.2.11/include -DCMAKE_INSTALL_PREFIX=. .. ``` *stdout:* ``` -- Source Directory: /home/flejzerowicz/softs/plass/lib/mmseqs...

Hi lord EMPeror, This is a usage idea for the biplots. The default feature names are rarely intelligible, while the metadata information that's associated with them are. Just like the...

Hi EMPeror lord, Such a feature could be very useful for biplot where features are associated with a numeric value, e.g. songbird differentials. Thanks, F

Hi EMPeror lord, For biplots, it would be great to be able to subset visualization items based on multiple criteria, for example: first remove features' arrows for e.g. "taxon level...

Enable stacked barplots for feature metadata

3

Hi, I believe that it is currently not possible to make a stacked bar plots for groups of feature metadata variables. EMPress only considers one feature at a time, right?...

Inverting which samples are greyed-out when selected on EMPeror

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Hi Darth Microbior :) On an EMPire plot, I find it counter-intuitive that when brush-selecting a set of samples on EMPeror, it is the selected samples that are greyed out....

Hi EMPeople, I think that an EMPire plot should actually show the empire (i.e. also a *territory*), in the flavour of [microreact](https://microreact.org/showcase). F

Cumulating selections/subsriptions to build a truly custom plot

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Hi, Can the types of subscriptions be cumulated? For example, to show samples containing (i) order Clostridiales (1st click' selection) and also show (i.e. cumulate) samples containing (ii) genus Prevotella...

PhyloFlash.pm hashing error during taxonomic redistribution: Can't use string as a HASH ref while "strict refs" in use

11

Hello and thanks for the self-contained, all-in-one super tool! I have generated a database using `phyloFlash_makedb.pl` based on 16S sequences extracted from genomes as follows: ``` phyloFlash_makedb.pl \ --silva_file /home/flejzerowicz/softs/phyloflash/wol/SILVA_WOL_DB.fasta...

Error running on GPU: device renaming issue?

2

Hi, So here's a command run on a gpu node in an interactiove slurm srun session: ``` $ rhapsody mmvec \ --microbe-file A.biom \ --metabolite-file B.biom \ --min-feature-count 5 \...