Lejzerowicz

Hi, Along those above lines, I was wondering whether it is possible to obtain `cgc.out` based on a previous `run_dbcan.py` output consisting of only: ``` diamond.out hmmer.out overview.txt prodigal.gff uniInput...

As for @lalalagartija, I end up with empty `cgc.out`. Here's what I did, with the latest version of `run_dbcan.py`: * First run: ``` run_dbcan.py contigs.fasta prok \ --out_dir outdir \...

Hi @linnabrown. Just wondering if you think you will have time to look at this. Otherwise, I would dig in the code and try to adapt a solution for my...

@iaunicorn Thank you for the hint! Indeed, in my .gff file the sequences IDs are labeled as such ``` NODE_1_length_998062_cov_18.990727 Prodigal_v2.6.3 CDS 30 830 52.0 + 0 ;ID=1_1 ``` whereas...

OK, it seems I have been using `Prodigal V2.6.3`, while GFF3 might only be an output of `Prodigal.v3.0.0`... Weird because I created a new conda env with it, following the...

Answering my own question. To convert GFF to GFF3; https://bmi.inf.ethz.ch/supplements/gff-tools Best, F

I have created a conda environment and from there, installed zlib with linuxbrew. Then I have erased the build folder, and restarted the installation procedure, but the problem persisted... So...

Hi @milot-mirdita and thanks for the quick answer. I could work it out using the conda install, but for optimized performance, I would have preferred compiling, but in the process...

Hi @thermokarst, I noticed that the import command you provided is not working for raxml info outputs that - I think - are not properly formatted. Could it be that...

Yes! A way to stack features metadata variables into a made-up-on-the-fly sample metadata could certainly do the trick for the purpose of one barplot. Now for your questions, I think...