Fadhl

code to compute connectivity score

3

Dear sir, Did you release the code to compute drug's connectivity score? I appreciate your reply. Regards

launch cellxgene with password

1

Hi Is there a simple way to launch cellxgene instance with a password so only users with a password can access it?

Hi, I am trying to convet large h5Seurat file into h5ad, BUT can not allocate the memory for this big file. Any help? ``` library(Seurat) library(SeuratDisk) library(SeuratData) kpmp_blue=hfile

```r # insert reproducible example here ``` I used Read10X_Image to read my visum data but I got the below error: “cannot open file 'tissue_positions_list.csv. I have only aggr_tissue_positions.csv, not...

spatial transcriptomics example

1

Hi, I looked at all examples you have and I am wondering if you can add can add one example for scRNA-seq with the image. https://vitessce.github.io/vitessce-r/articles/ome_tiff_remote.html all the examples you...

error when run import_omnipath_annotations

1

Hi Any help for this error 

Hi , I got this after I upload my h5ad file to map `all(dims >= dims.min) is not TRUE` second how to download the reference dataset for the kidney? it...