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how to make Read10X_Image work with aggr_tissue_positions.csv?

Open FADHLyemen opened this issue 2 years ago • 0 comments

# insert reproducible example here

I used Read10X_Image to read my visum data but I got the below error: “cannot open file 'tissue_positions_list.csv. I have only aggr_tissue_positions.csv, not tissue_positions_list.csv. I have also one filtered_feature_bc_matrix.h5. By looking at the spatial folder I find four subfolders that indicate this h5 data is aggregated for all four samples. How to tweak Read10X_image to work in this type of format?

Thank you

FADHLyemen avatar Aug 30 '22 22:08 FADHLyemen