Mark Amery

I don't own a Mac, but I use one at work now, and will look into this tonight before I leave if I get the chance. If I can't reproduce...

Sorry for the delay. Just updated to OS X 10.10.3 and I can't reproduce this. If anybody is still able to reproduce it, could you provide some more information that...

I have no idea how to exclude files _only_ from the CTRL-P menu without excluding them from the sidebar. I believe this is impossible. If anybody with a better knowledge...

For the benchmark section, I'd suggest just comparing against `diffChars`, since (as I understand it) the benchmarks you've already got are based on character diffs, and `diffChars` is also the...

Not sure whether anything should change in Napoleon, but for whatever it's worth, you can also get the result you want by using this indentation which I don't think is...

Pretty sure there's a bug in `extract_read`. In the use-case where your reference sequence is a single short non-circular chromosome (perhaps because the "chromosome" is really a PCR amplicon you...

https://github.com/karel-brinda/NanoSim-H/pull/16 fixes the hang. However, when running against a short reference with that fix applied, I now see this crash instead: ``` Traceback (most recent call last): File "/Library/Frameworks/Python.framework/Versions/3.6/bin/nanosim-h", line...

I've pushed another commit to #16 to fix the error mentioned above.

I think this is fixed on devel and can be closed? Not yet released to master or PyPI, though.

Hmm. The specific case of `diffWords` should tend to give much more readable results these days since spaces are no longer treated as tokens. Is there a compelling case for...