Eric Kutschera

I saw a similar `Illegal instruction (core dumped)` from TideHunter which uses abPOA. It seems that the conda package was built so that it uses instructions that some CPUs might...

1. The snakemake_config.yaml is intended to stay in the IRIS/ folder. If you want to run IRIS multiple times in parallel you could create a separate install of IRIS in...

Building your own pipeline from the individual functions is reasonable. Depending on how much you want to change, you could try modifying the provided snakemake workflow instead of building a...

`IRIS_data/` is only available for hg19 and I'm not aware of any plans to update IRIS to hg38. Here's a related post: https://github.com/Xinglab/IRIS/issues/7

The check in the screening step is for 'group' or 'personalized', but the script that writes the parameter file uses 'group' or 'individual' which matches with the comment in the...

IRIS is written for python2 and we don't currently have plans to update to python3

The workflow looks like it failed on: `rule write_param_file` which is the first rule that tried to use the conda environment. There should be an error message in one of...

I was able to run the install without setting `channel_priority:` and without setting any `channels:`. You could try (temporarily) removing those lines from your config and rerunning the install The...

The example dataset was updated in IRIS v2.0.0 to start after the format step, but that part of the README still references the old files. The example from v1.0.0 includes...

The code tries to find the sequence to translate based on https://github.com/Xinglab/IRIS/blob/v2.0.1/IRIS/data/uniprot2gtf.blastout.uniprotAll.txt. Once if finds a valid value it stops looking and there is a comment mentioning that only 1...