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A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

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Use scikit-learn instead sklearn

Modify setup.py from sklearn to scikit-learn

bj600800 avatar bj600800

OSError: [Errno 24] Too many open files

First of all, thanks for your repository! I'm trying to use this repository to estimate the temperature optima of my genomes. However, when I run it with 12 threads for...

Hocnonsense avatar Hocnonsense

Predict Topt from protein sequence and OGT

5 comment

Currently we can only get pre-calculated Topt from BLAST results. It would be very handy to predict the Topt directly from the protein sequence (or AA frequency) and OGT calculated...

yanshouyu avatar yanshouyu

enhancement

How to download the data directly from the BRENDA database?

1 comment

Incredible work! It would be really helpful if you could share the scripts to make the queries and download the data from BRENDA since its API seems to be broken...

diegovalenzuelaiturra avatar diegovalenzuelaiturra

predOGT.py import joblib error

Changing line 23 from: from sklearn.externals import joblib to: import joblib Seems to fix it, assuming joblib is already installed

GoldSquadronBombadier418 avatar GoldSquadronBombadier418

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verified publisher icon EngqvistLab

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A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

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