goci
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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
Laura needs to update the GDPR notice for deposition app (lchange from consent to legitimate use according to Aoife). Then update the About page to include deposition.
Comment from Daniel S: Are the columns “NUMBER OF CASES”, “NUMBER OF CONTROLS” manually filled? Because however the initial sample description and replication sample description are filled, but the parsed...
There are several small issues with data display/population in the whole-Catalog file downloads https://www.ebi.ac.uk/gwas/docs/file-downloads
From Daniel S: I would like to report an absolutely miniscule bug I found in the format of the download files. You provide study table for the unpublished studies[1] and...
From gwas-info: "I downloaded the catalog data from your website (gwas-association-downloaded_2022-05-19-EFO_0000729.tsv) and unfortunately recognised, that all occurrences of the gene name Y_RNA are mapped to ENSG00000199357, which is at least...
Sumstats API loading needs migrating to codon and file paths updated accordingly
### Background - CNV (copy number variation) studies are GWAS that look at a different kind of genetic variant compared to the SNPs identified in standard GWAS. - At an...
Several users including Ensembl have asked for an easier way to distinguish OR and beta in the associations download. We should add a column to the associations download called "Effect...