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GWAS Catalog Ontology and Curation Infrastructure

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Every data release, publish a data change log containing a breakdown of new, removed, changed studies in the gwas catalog and summary statistics (submitted and harmonised). Previous changelogs should be...

According to this https://sysinf.ebi.ac.uk/doku.php?id=slurm_migration_faq the Codon cluster will be converted from LSF to SLURM by March 2023. For the pipelines written in Nextflow and Snakemake, this is as easy as...

Epic

This jar needs to be deployed to the sw directory on codon where it runs as part of the DR

https://docs.google.com/document/d/1GVBFqZ2ZIkZUp_RzznY_gnID7Po9KMb_gCLkUOzN05Q/edit#

Epic
depo-curation-admin-features-2

As a user, I want to be able to add sumstats to a publication that already has sumstats for some but not all of the studies, without having to contact...

Metadata template upload currently allows case-insensitive entry of study tags, i.e. study tags can be entered with different cases in study tab and sample tab. This causes downstream problems (e.g....

A user reported the issue of this page not loading https://www.ebi.ac.uk/gwas/efotraits/EFO_0005278. The page has many studies and associations

The corresponding author field currently displays the first author instead, so should be temporarily removed to avoid displaying incorrect information.

As a curator, when assigning traits (incl. reported traits, EFOs and background EFOs) in the depocuration app, I need to be able to access the full list of GCSTs and...