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Migrate from LSF to SLURM

Open jdhayhurst opened this issue 2 years ago • 0 comments

According to this https://sysinf.ebi.ac.uk/doku.php?id=slurm_migration_faq the Codon cluster will be converted from LSF to SLURM by March 2023.

For the pipelines written in Nextflow and Snakemake, this is as easy as changing the profile/config. There are other places that will break where bsub commands are baked into the script e.g. the bamboo plans - these would all need updating to SLURM commands.

jdhayhurst avatar Aug 10 '22 10:08 jdhayhurst