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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
The ancestry page: https://www.ebi.ac.uk/gwas/ancestry url should be changed to https://www.ebi.ac.uk/gwas/populationdescriptors Title to be changed to "Population descriptors" on this page and on the homepage The documentation page https://www.ebi.ac.uk/gwas/docs/ancestry should also...
Update the titles & descriptions on the sub-pages linked from this page https://www.ebi.ac.uk/gwas/ancestry as follows: - Ancestry documentation -> Curation of population descriptors A description of our data extraction and...
https://www.ebi.ac.uk/gwas/docs/fileheaders#_file_headers_for_ancestry_download https://github.com/EBISPOT/gwas-ui/blob/documentation/goci-interfaces/goci-ui/src/main/docs/fileheaders-content.adoc Action: update definition of “Broad ancestral category” New definition: BROAD ANCESTRAL CATEGORY: Ancestry category group label, assigned to reduce complexity within the data sets and place samples in...
AAP will no longer be supported by EBI and so we need to implement a replacement.
As in the submissions in https://github.com/EBISPOT/goci/issues/1404, when a submission fails first and then pushed through the validation, it creates ambiguous entries in mongo `sumstats-study-meta` collection. Investigate and fix.
we have huge impact in data release if Efo's are missing , the Data release fails at Solr QC step & we have to start DR from scratch to fix...
Updates required to support aims of NASEM report on population descriptors in genomics.
A user has asked if we can harmonise the sumstats files for this publication. I had a look and they are very early sumstats files (last modified 2019) and are...
`genome_assembly` and `file_type` are crucial fields for the harmonisation pipeline. While they are defined as mandatory in the current YAML file, they allow an empty string as the value, which...
