goci
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EBISPOT
GWAS Catalog Ontology and Curation Infrastructure
A user reported the associations download file has missing rows since the latest DR. I verified the number of rows in the file is 508,403 but the number of associations...
We would like to verify whether there is a significant difference in efficiency of the hm pipeline for seq GWAS. 1. Calculate the average % of dropped and unable to...
Based on the previous test, the harmonisation pipeline can finish 400 studies per day, however, when we ran the harmonisation pipeline using the spotbot account, 400 studies took more than...
Export entire Oracle database as sql dump and share via OwnCloud or ftp if OwnCloud has insufficient storage. Submitter names & emails must be removed for data protection (note, publication...
Since publications can now be assigned a status in Depo-curation, all existing publications should be assigned a status and curator that matches the status and curator in the curation app....
By user request, I needed to update metadata for 2 studies with sumstats: GCST90296499 and GCST90296498 **In the submission template, through the DepoCuration App, I edited the following columns:** analysis_software:...
We need to create an online documentation/ tutorial about how to use gwas-sumstat-tools, so that both internal and external users can read and use gwas-sumstat-tools using CLI or UI. When...
From Depocuration User Interface, Create a feature that allows curators to still link submission: - Especially in situations where the Import and Link Submission web page is accidentally refresh, after...
A user submitted sumstats under GCST90295957 (submission id `6525350ce6cd8200013b5056` - body of work) Curator submitted without sumstats under GCST90328130 (submission id `65fd5102b73c7400017cc520` - PMID 38190104 - now in Catalog). Could...