Dave

@philarevalo Hi, I think I am also a little confused about this problem. What is the difference between the two folders, input_contig_dir and contig_dir? In the README file, the knowledge...

I tried it and when I added this section to the genomeviz.py script I found that I could extend the area of the link, but I can't control the position...

I believe that providing Conda images would allow everyone to use mcorr more effectively. In fact, after experiencing multiple installation failures and encountering errors when running the examples, I reluctantly...

Also, another point of confusion for me is, is it not possible to use a gbk file with -- region parameter for different genomes, I have now manually annotated a...

Hi, I have prepared the example data as requested: 1. `s5.fasta`: The genome sequence annotated by PGAP pipeline. 2. `s5.gbk`: The raw GenBank file generated by PGAP for `s5.fasta` contains...

I agree with you that my previous considerations were somewhat lacking (especially in the case of large genomic differences). However, my intention was mainly to apply carefully prepared annotations (e.g.,...

The second point you mentioned --protein I have tried, it has certain limitations, that is, it only works for the cds predicted by bakta, so I think the first point...

I tried another software, lifton(https://github.com/Kuanhao-Chao/LiftOn), which fits my idea of being able to do migration from annotation of one genome to another, but it is designed for eukaryotes, is it...

I can work with Prodigal as required. However, I have concerns about the accuracy of CDS predictions made by Prodigal, as it lacks a certain error correction. Support for formats...

Hi, can it directly support traditional saving methods, such as ggsave? For now, the experience of webshot2 is too bad, I cannot output the size correctly, and the exported PDF...