DustinChen1986

2.0.13 suffers with the eggNOG mapper

3

I try eggNOG mapper v2.1.6 with Diamond 2.0.13. The computer crashs down or restarts when eggNOG mapper calls the Diamond. I try to run Diamond according to eggNOG mapper, the...

I want to install orthofinder by mamba. But it returned a problem as follow: "Encountered problems while solving. Problem: package mamba-0.0.7-py36hc9558a2_1 requires python >=3.6,

What dose -s mean?

2

python SwiftOrtho/bin/find_hit.py -p blastp -i input.fsa -d input.fsa -o input.fsa.sc -e 1e-5 -s 111111 -s: space seed pattern. Could you figure out '-s: space seed pattern'?

Stop at the same region of genome

1

Hi, I got bam with pbmm2 v1.3.0. `pbmm2 align ref.mmi mymovies.fofn pbmm2.bam --sort` Then I used kineticsTools: `ipdSummary pbmm2.bam --reference genome.fasta --identify m6A,m4C --methylFraction --gff kinetics.gff --csv kinetics.csv --bigwig kinetics.bw...