DustinChen1986

Results 6 comments of DustinChen1986

2.0.13 suffers with the eggNOG mapper

My computer has 64Gb memory. The query file is a fasta file of protein sequences with 17.2Mb optained by TransDecoder from a transcriptome assembly. The commond line: Diamond 2.0.13： emapper.py...

Using salmon quantification with DeSeq2

This is a really torturous step for none R knowledge to use tximport for data transmission to DESeq2. Main problem is that the count matrix for DESeq2, which can be...

Using salmon quantification with DeSeq2

Hi authentic-zz: I have succeeded to use tximport package to transmit salmon results to DESeq2. Now I have 6 salmon results named T11.sf, T12.sf, T13.sf，T21.sf，T22.sf，T23.sf. And I have the transcripts...

Using salmon quantification with DeSeq2

To authentic-zz: You mean you have get the counts into a data frame. I don't know how to transfer the salmon data frame into DESeq2，and I fail to handle data...

Using salmon quantification with DeSeq2

> @DustinChen1986 Hello DustinChen1986 Your codes are clean and easy to read,while I have a problem.How can I create "transcript2Gene.csv“? Thank you for your patient. Yang RT The first column...

What dose -s mean?

Thank you for your explanation. I'll figure it out.