Zhilin Long
Zhilin Long
Nice tool! when using the cisbp to analysis TF enrichment, I found that there are many negative value in the PWM matrix in human_pwms_v2. In this case, I can't plot...
Nice tool! The dyno package directly input the count or normalised count, which is not correct the batch effect. How does dyno handle this batch effect problem？ If I corrected...
I used the strelka to identify germline and somatic mutation for a tumor sample. The StrelkaGermlineWorkflow runs normally, but StrelkaSomaticWorkflowruns an error. The version of strelka is 2.9.10. This is...
Thanks for developing a nice tool! I used glue to integrate scRNA-seq and scATAC-seq datasets from multiple samples. I want to get clustering results covering both modalities in the umap...
I did not found the many function (e.g., find_variable_genes). I don't know why? This is my code: import Cell_BLAST as cb 
Thank you for developing the wonderful tool. I'm having a problem with the enrichPeakOverlap function. I found that the p-value is the same for different target peaks. The following code...
Hi cNMF team, Thanks for developing a nice tools! I extracted different programs in serveral samples and want to assess the program similarity. I noticed there are two gene expression...
When I install cnmf using pip and encounted a problem. ERROR: Could not find a version that satisfies the requirement cnmf==1.4 (from versions: 1.3.0, 1.3.1, 1.3.2, 1.3.4)
I want to use custom interaction pairs. But when I use this command, there is a error: command: cellphonedb database generate --user-interactions test.csv --user-interactions-only error:  The content of text.csv...
Hi, I input the 16155 region into the rGREAT package and web-based tool with same parameters. job