napari-deeplabcut

napari-deeplabcut copied to clipboard

After opening GUI by typing down `napari` and turning on `KeypointControls: napari_deeplabcut` button in the plugins, it turns out to run into error: `RuntimeError: Failed to import command at 'napari_deeplabcut._widgets:KeypointControls':...

AthiemoneZero

This code was written as part of the [Lemanic Life Sciences Hackathon](https://www.epfl.ch/schools/sv/lemanic-life-sciences-hackathon/) at EPFL, the 26th and 27th of April 2024. It implements a mostly functional prototype to automatically generate...

C-Achard

labelling GUI won't open frames after manual extraction (avi video)

3

I am trying to use the labelling GUI to refine the labels on some manually extracted frames. I extracted the frames manually and then when I go to use the...

geffenlab

Seb/display skeleton

5

Skeleton visualisation of keypoints. https://github.com/DeepLabCut/napari-deeplabcut/assets/28102185/60f1849e-4850-4a2f-9c73-506a1b068e64 For now hardcoded with my keypoints but should be easily adjustable to use config bodyparts. For now, the show skeleton tick box is not connected...

hausmanns

Hi DLC developer! I am recording video at 60 Hz for 1 h. I was not able to use napari to manually extract frames (freezes for minute every move of...

hziyan

Increasing the smoothness of the video progress bar

3

Hi napari-deeplabcut! I am a big fan of both napari and deeplabcut, and I was so excited when I first found out about this collaboration. This is my first pull...

H-Dempsey

New way to detect outlier frames in the Napari Deeplabcut plugin by clustering keypoints. Recipe: https://deeplabcut.github.io/DeepLabCut/docs/recipes/ClusteringNapari.html

sabrinabenas

clustering in napari-DLC GUI

3

Hi, I want to use the clustering feature in the napari-DLC GUI for a multi-animal dataset. I am following the instructions written here: https://deeplabcut.github.io/DeepLabCut/docs/recipes/ClusteringNapari.html#clustering. I can successfully load the CollectedData_.h5...

rs3966

DLC - clustering

2

Hi, I would like to try out clustering plugin in deeplabcut napari. Unfortunately after installing it using "pip install git+https://github.com/DeepLabCutAIResidency/napari-deeplabcut.git@cluster1" command I hit errors, such as: Anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_deeplabcut\_writer.py:6 ModuleNotFoundError: No module...

ewelinacyrano

Hide already refined layers

1

Point to this discussion for more details - https://forum.image.sc/t/napari-labeling-gui-issues/77317 The lack of documentation and default to show all layer levels is confusing for the user when refining labels. Is there...

dlhagger