labelling GUI won't open frames after manual extraction (avi video)

[geffenlab]

I am trying to use the labelling GUI to refine the labels on some manually extracted frames. I extracted the frames manually and then when I go to use the labellingGUI to refine the labels on these frames it won't open them. In the GUI I get the following error: "Tried opening with napari-deeplabcut but failed". It then prompts me to use the napai-builtin and to override the existing preference, nothing happens if I do that though.

In the anaconda prompt window, I get the following: Traceback (most recent call last): File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1202, in _open_or_raise_error added = self._add_layers_with_plugins( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1292, in _add_layers_with_plugins layer_data, hookimpl = read_data_with_plugins( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\plugins\io.py", line 77, in read_data_with_plugins res = _npe2.read(paths, plugin, stack=stack) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\plugins_npe2.py", line 63, in read layer_data, reader = io_utils.read_get_reader( File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\io_utils.py", line 66, in read_get_reader return _read( File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\io_utils.py", line 160, in read read_func = rdr.exec(kwargs={"path": paths, "stack": stack}) File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\manifest\contributions_readers.py", line 52, in exec callable = super().exec(kwargs=kwargs) File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\manifest\utils.py", line 65, in exec return self.get_callable(_registry)(*args, **kwargs) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_deeplabcut_reader.py", line 81, in get_folder_parser layers.extend(read_hdf(datafile)) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_deeplabcut_reader.py", line 180, in read_hdf temp = pd.read_hdf(filename) File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\pandas\io\pytables.py", line 437, in read_hdf raise ValueError( ValueError: key must be provided when HDF5 file contains multiple datasets.

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_qt\qt_viewer.py", line 953, in _qt_open self.viewer.open( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1102, in open layers = self._open_or_raise_error( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1211, in _open_or_raise_error raise ReaderPluginError( napari.errors.reader_errors.ReaderPluginError: Tried opening with napari-deeplabcut, but failed.

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_qt\qt_viewer.py", line 1318, in dropEvent self._qt_open( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_qt\qt_viewer.py", line 961, in _qt_open handle_gui_reading( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_qt\dialogs\qt_reader_dialog.py", line 201, in handle_gui_reading open_with_dialog_choices( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_qt\dialogs\qt_reader_dialog.py", line 294, in open_with_dialog_choices qt_viewer.viewer.open(paths, stack=stack, plugin=plugin_name, **kwargs) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1092, in open self._add_layers_with_plugins( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\components\viewer_model.py", line 1292, in _add_layers_with_plugins layer_data, hookimpl = read_data_with_plugins( File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\plugins\io.py", line 77, in read_data_with_plugins res = _npe2.read(paths, plugin, stack=stack) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari\plugins_npe2.py", line 63, in read layer_data, reader = io_utils.read_get_reader( File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\io_utils.py", line 66, in read_get_reader return _read( File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\io_utils.py", line 163, in read if layer_data := read_func(paths, stack=stack): File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\npe2\manifest\contributions_readers.py", line 60, in npe1_compat return callable(path) # type: ignore File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_builtins\io_read.py", line 491, in _magic_imreader return [(magic_imread(path),)] File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_builtins\io_read.py", line 227, in magic_imread image = imread(filename) File "C:\Users\SeaMonkey\anaconda3\envs\DEEPLABCUT\lib\site-packages\napari_builtins\io_read.py", line 94, in imread return imageio.imread(filename) File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\imageio\v2.py", line 226, in imread with imopen(uri, "ri", **imopen_args) as file: File "C:\Users\SeaMonkey\AppData\Roaming\Python\Python38\site-packages\imageio\core\imopen.py", line 303, in imopen raise err_type(err_msg) ValueError: Could not find a backend to open C:\Users\SeaMonkey\Documents\deeplabcut\Kath\2P_across_mice-Kath-2024-02-26\labeled-data\20191121K156_2P_FRA_539_ds\CollectedData_Kath.csv`` with iomode ri`.

Is there a way I can fix this easily? I'm not sure what happened... Thanks!

[geffenlab]

Now the labelling GUI is not working at all. When I open it, I get the tutorial box but a completely white window and an error about fonts in the command window: WARNING: DirectWrite: CreateFontFaceFromHDC() failed (Indicates an error in an input file such as a font file.) for QFontDef(Family="MS Sans Serif", pointsize=12, pixelsize=16, styleHint=5, weight=400, stretch=100, hintingPreference=0) LOGFONT("MS Sans Serif", lfWidth=0, lfHeight=-16) dpi=106

[Kirito2933]

Hello, I also have this problem, has it been solved？

[jeylau]

@geffenlab, it looks like there is something wrong with how the h5 data file was saved. Would you be willing to share your image folder so I can take a look?