graphtyper

graphtyper copied to clipboard

Created chopped CRAI

2

Is it possible to share the script creating chopped CRAI for a list of CRAM files? The method is brief in "SNP and indel calling with GraphTyper" section in Nature...

nathanLauHKGI

Is it possible to call STRs with graphtyper?

1

What would be the arguments/parameters in such case? Thank you!

scienception

vcf_merge for SV

1

Hi @hannespetur, We ran graphtyper2 using v2.5.1 two years ago to re-genotype SVs. We noticed that vcf_merge in v2.5.1 does not include the --sv parameter. Can we still merge the...

JoannaTan

( AC / NUM_MERGED_SVS ) < 25

1

"( AC / NUM_MERGED_SVS ) < 25" is part of the published paper of GraphTyper2. I cannot figure out what its purpose is. Could you explain it to me? Thanks,...

weizhu365