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Published 20 hours ago • verified publisher icon DecodeGenetics

vcf_merge for SV

Open JoannaTan opened this issue 3 months ago • 1 comments

Hi @hannespetur,

We ran graphtyper2 using v2.5.1 two years ago to re-genotype SVs. We noticed that vcf_merge in v2.5.1 does not include the --sv parameter. Can we still merge the SVs across samples using vcf_merge? Can we also know how vcf_merge compute the QD across samples because i noticed that the QD seems to change when we merge VCF across samples.

Hope to hear from you soon.

Thank you.

Best regards, Joanna

JoannaTan avatar Mar 25 '24 06:03 JoannaTan