Anan Ibrahim
Anan Ibrahim
This PR adds the ampcombi module. It is now working on taking two kinds of inputs. The respective flags are called depending on whether the input is a directory or...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist This PR addresses the issue #4999 and closes PRs #4659 and #4533 - [x] This comment contains a description of changes (with reason). - [x] If you've...
### Is your feature request related to a problem? Please describe AMPCOMBI latest version 0.2.0 ### Describe the solution you'd like Module needs an upgrade ### Describe alternatives you've considered...
### Description of feature The new version of antismash requires essential parametrs that i would suggest to be included in the pipeline. Those are `pfam2go --rre --tfbs` at the moment...
### Description of feature AMPcombi is now completely restructured, to better suit the ouput of FUNCSCAN
### Description of feature Adapt deepBGC to use GPU, at the moment it uses CPU and for large input datasets takes ages to run.
### Description of feature Currently, some modules take in `.fna` as an input rather than taking in `.faa` as an input from the annotation tool assigned. This might create diffrerences...
## PR checklist **Purpose:** This PR adds a subworkflow that combines multiple mmseqs tools. **Function:** This adds taxonomic classification to input 'nucleotide' sequences (e.g. contigs) , which can potentially be...
Hi there, First, the code for the app is written very well and the idea behind it is very promising ! My issue is, I have a set of test...