Daniel VM comments

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                                            Daniel VM

List of ideas to improve assemblies

I have found these two papers that may help us to decide. Both include a detailed flowchart with some of the tools we already have included and additional tools/strategies: [Molina-Mora...

samplesheet should have a suffix .tsv if it is a tab-separated file as described

Closing this, please open it again if considered.

Add A5-miseq support

Closing this issue. Please feel free to reopen it if needed.

Pilon issue (default_jvm_mem_opts)

Clossing this issue, please feel free to reopen it if needed

remove the need for `ncbi_assembly_metadata`

Thank you so much, @SchwarzMarek ! I've been out of office these days. 🙏🏾 I plan to test it locally by next week and share my thoughts. 😉

Added module to concatenate/merge fastq files

- [X] Update: A test sample sheet with duplicated sample names and different FASTQ content is pending addition (not ready for review). - [x] Merge nf-core v3.0.2 template update.

FASTP module not finding input paths

Hi @m-jahn !, Thank you for testing. It seems to be an issue related to the symlinks. I’ve been busy and haven’t had time to fix it, but I’d be...