Daniel VM

Apologies for the late response. Great, I still have to fix some minor points in the code and run additional tests. Once it's ready, I will let you know. Regarding...

I think this is fixed in `master` branch. All test passed , including "skip all steps". `(master) $ nf-core subworkflows test fastq_fastqc_umitools_trimgalore` ``` ,--./,-. ___ __ __ __ ___ /,-._.--~\...

I'm on it, @d4straub! 👍🏾 I'm encountering a bit of trouble getting the [latest template](https://github.com/nf-core/bacass/pull/114) update to work in `nf-core/bacass`.

In addition, I would like to mention that we need to consider implementing Flye because it can already be accessed through the Dragonflye module, which is already implemented but in...

Awesome @lborcard. We have other interesting approaches in mind re: #57 . For example, improving assembled genomes by adding a genome rotation step. We proposed here [cyclator ](https://github.com/sanger-pathogens/circlator) or [dnaapler...

> So dnaapler/cyclator would take the output of Dragonflye? is there a module for either of these tools? I think so. I have never tryed yet, but it is likely...

Sure 💯 . Please add a git issue for dnaapler implementation ;).

[UPDATE] some locals have now an nf-core version and have been refactor into nf-core modules (#86): | Tool | Previous version | New version | | -------- | ---------------- |...

Working on Flye and Pilon!

Those are really good points @erinyoung and @d4straub 🙌🏾 🙌🏾 . ## Downsample step Yep, downsample is indeed necessary. We could try random subsampling with [rasusa.](https://github.com/mbhall88/rasusa). In [De Maio N...