Lon Blauvelt
Lon Blauvelt
Description of WDL function to be added: ## Array[String] quote(Array[X]) Given an `Array[X]` where `X` is a primitive type, the `quote` function returns an array of strings comprised of each...
Description of WDL function to be added: ## Array[String] suffix(String, Array[X]) Given a String and an Array[X] where X is a primitive type, the `suffix` function returns an array of...
Description of WDL function to be added: ## Array[String] prefix(String, Array[X]) Given a String and an Array[X] where X is a primitive type, the `prefix` function returns an array of...
We want to test both the Google job store and the provisioner. The job store is currently done. Address any problems that come up in the provisioner. Identify any tests...
This moves some of our AWS functions into their own library and is a prelude to removing sdb. ## Changelog Entry To be copied to the [draft changelog](https://github.com/DataBiosphere/toil/wiki/Draft-Changelog) by merger:...
There is a memory limit on the length of bind arguments one can pass in the CLI and we can hit that limit (particularly Toil, which handles directories differently and...
Source: https://ucsc-ci.com/databiosphere/toil/-/jobs/82743 ``` _____________________ JobServiceTest.testServiceRecursive ______________________ Traceback (most recent call last): File "/builds/databiosphere/toil/src/toil/test/src/jobServiceTest.py", line 177, in runToil Job.Runner.startToil(rootJob, options) File "/builds/databiosphere/toil/src/toil/job.py", line 1743, in startToil return toil.restart() File "/builds/databiosphere/toil/src/toil/common.py", line...
It's `Black`, but supposedly doesn't nuke our entire code history: https://pypi.org/project/darker/ We should discuss this @adamnovak . ┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-1221) ┆friendlyId: TOIL-1221
``` [2022-09-14T12:48:03+0000] [MainThread] [D] [toil.provisioners.node] Running ['rsync', '-e', 'ssh -oUserKnownHostsFile=/dev/null -oStrictHostKeyChecking=no', '--rsync-path', 'docker exec -i toil_leader rsync -v', '[email protected]:/etc/kubernetes/worker.ini', '/tmp/tmppi1r0bl3/worker.ini']. Warning: Permanently added '52.10.65.120' (ECDSA) to the list of known...
As @jsmedmar pointed out with #4172 (thanks for submitting a fix!), we probably shouldn't schedule time on a worker for these types of jobs. This PR should be rebased with...