Lon Blauvelt
Lon Blauvelt
https://docs.google.com/document/d/1dQP2QfmJRmUtwuM5hKnB1rktM2DUpghdut-_fd5xELQ/edit?ts=5ef2415f#heading=h.aenwtc5w5k03 ┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/TOIL-573) ┆friendlyId: TOIL-573
@adamnovak made a good point: `What's the point of atomically creating it with the right contents if the metadata isn't also part of that atomic operation?` See: https://github.com/DataBiosphere/toil/pull/3437 ┆Issue is...
`ssh-cluster` / `launch-cluster` can fail if you have too many ssh keys and the actual key you want to use happens to be attempted too late. This can be reproduced...
Especially here: https://toil.readthedocs.io/en/latest/running/cliOptions.html . This should(?) be the correct way to push Toil to submit more jobs in a system like LSF (which is otherwise limited by cpu), but get...
Description of WDL function to be added: ``` ## String sep(String, Array[String]) - Return the strings in the array concatenated, with the first parameter between each. ``` https://github.com/openwdl/wdl/blob/main/versions/development/SPEC.md#string-sepstring-arraystring * [...
Description of WDL function to be added: ## String basename(String) * This function returns the basename of a file path passed to it: `basename("/path/to/file.txt")` returns `"file.txt"`. * Also supports an...
Description of WDL function to be added: ## Boolean defined(X?) This function will return `false` if the argument is an unset optional value. It will return `true` in all other...
Description of WDL function to be added: Given an array of optional values, `select_all` will select only those elements which are defined.https://github.com/openwdl/wdl/blob/main/versions/development/SPEC.md#arrayx-select_allarrayx * [ ] Add the following WDL function...
Description of WDL function to be added: ## X select_first(Array[X?]) Given an array of optional values, `select_first` will select the first defined value and return it. Note that this is...
Description of WDL function to be added: ## Array[String] squote(Array[X]) Given an `Array[X]` where `X` is a primitive type, the `squote` function returns an array of strings comprised of each...