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Allele-specific copy number estimation with whole genome sequencing

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### Replacing Impute2 with Beagle - Changed the phasing routine. "Beagle" replaced the program "impute2". Files and tools were renamed accordingly. - Renamed all tools and files from "imputeGenotype" to...

HI, First thanks for developing such an awesome tool. I want to apply it on my WGS data to call somatic CNA. However, when I tried this step: conda env...

MultiQC simplifies the visual representation of QC data. For display in MultiQC result files either should be one of the already supported formats or can be annotated. Check the output...