scMEGA

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I'm trying to use `CreatePairedObject` using both RNA and ATAC assays, and I have an Error like the following: What could be the issue here?

venkan

With the new version of Seurat, some functions are no longer working as expected. For example GetTrajectory

lzj1769

Hi, Thanks for maintaining a really nice R package. I am trying to use the CoembedData function as follows: ``` obj.coembed

kylepalos

error in SelectTFs or GetTrajectory

1

Dear scMEGA team, Thank you for developing this useful package. I am working with Arabidopsis datasets - GSE173834 for the scATAC data and my own scRNA-seq data. When I integrated...

rahulnutron

problem with SelectTFs

5

Hello there I'm tryingto run ScMega on 10X multiome RNA+ATAC data obtained in Rats tissus. When I run the : res

Dalhte

SelectGenes use other genome

2

Hi! i noticed that `SelectGenes` Available genome are: hg19, hg38, mm9, and mm10 can i use the genomes of other species? If so, how exactly should I do it

liyang24

Motif matching when using mouse data

6

Hi! I was running into an issue when selecting TFs in my mouse data, because the motif names did not match many genes in the gene exp data. I ended...

AmandaKedaigle

NetCentPlot error

4

Hi! thanks for the jobs I've got the object to build the network on > head(df.grn2) tf gene weights 77 ATF4 GABARAPL1 0.8221601 85 ATF4 GRIK3 0.8021985 100 ATF4 KIT...

liyang24