Motif matching when using mouse data

[AmandaKedaigle]

Hi! I was running into an issue when selecting TFs in my mouse data, because the motif names did not match many genes in the gene exp data. I ended up altering the SelectTFs and GetTFGeneCorrelation code to

rownames(trajMM) <- stringr::str_to_title(object@assays[[atac.assay]]@[email protected])

(although maybe a biomaRt matching or something would be more accurate) and am getting better results, so I thought I'd note it!