Connor Barnhill

Bugfix: bayesian hyperparameter optimization casting to int

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# Pull Request Template ## Description Fix bug in Bayesian hyperparameter optimization class. Even when specifying hyperparams as class 'int', GPGO still returns floats. The existing logic to cast hyperparameters...

fix callback for torch models

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# Pull Request Template ## Description Fix #2853 Fix an issue that arises when using ValidationCallback with TochModel ## Type of change Please check the option that is related to...

RuntimeError when adding ValidationCallback to torch model (MPNNModel)

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## 🐛 Bug Training an MPNNModel with a ValidationCallback throws a RuntimeError. Based on some [quick googling](https://discuss.pytorch.org/t/cudnn-rnn-backward-can-only-be-called-in-training-mode/37622), it looks like this happens in pytorch when 'model.eval()' is called and 'model.train()'...

Writing VCF with FloatType in INFO field fails

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Trying to write a single VCF file (bigvcf) from a spark dataframe. I have an INFO field that's a float. Writing throws an error on the FloatType: 

Is GQ re-computed after splitting multi-allelic?

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Looking at the [docs for splitting multiallelic variants](https://glow.readthedocs.io/en/latest/etl/variant-splitter.html), it looks like the answer is no. This differs from the hail implementation of "split_multi_hts". Should QC filters based on GQ be...

Image data generator quiet mode?

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Is there any reason why there isn't a quiet mode for ImageDataGenerator.flow_from_dataframe? It's not ideal to see "Found {} non-validated image filenames." for every initialization.

Logistic regression ValueError: Null fit failed!

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Hello, When running the step 2 logistic regression I get an error: ValueError: Null fit failed! This is the first time I've hit this error. I've gathered it's an error...

Error when using non-human GTF

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Hello, I'm trying to run TALON on PacBio data from a non-human primate (using [this](https://hgdownload.soe.ucsc.edu/hubs/GCF/012/559/485/GCF_012559485.2/genes/GCF_012559485.2_MFA1912RKSv2.ncbiRefSeq.gtf.gz) gtf file, parent directory [here](https://hgdownload.soe.ucsc.edu/hubs/GCF/012/559/485/GCF_012559485.2/genes/)). I'm able to initialize the database, label the reads, and...