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Published 20 hours ago • verified publisher icon projectglow

Writing VCF with FloatType in INFO field fails

Open ConnorBarnhill opened this issue 2 years ago • 3 comments

Trying to write a single VCF file (bigvcf) from a spark dataframe. I have an INFO field that's a float. Writing throws an error on the FloatType:

image

ConnorBarnhill avatar Sep 08 '21 16:09 ConnorBarnhill

what happens if you set the validation stringency to lenient?

williambrandler avatar Sep 12 '21 19:09 williambrandler

Same result

ConnorBarnhill avatar Sep 14 '21 15:09 ConnorBarnhill

Was this INFO field represented in the original VCF? And has the schema changed for the INFO field?

williambrandler avatar Sep 16 '21 16:09 williambrandler

This should be resolved now

henrydavidge avatar Mar 21 '24 09:03 henrydavidge