beast2

beast2 copied to clipboard

Issues with Treeannotator 2.7.7

1

Hi, Longtime BEAST2 user here! I just updated to the latest version of everything, and I am suddenly having issues with Treeannotator (command line) that I have never had before....

lilychughes

Beast 2 home dir problem

3

I have installed beast 2.7.1 for our user system wide, but every time it makes a ~/.beast directory with base and app dirs. How can I make it to look...

hrzolix

Currently, the `Alignment` class does not allow editing of the actual alignment. Also, it does not allow continuous values. However, BEAUti relies on the `Alignment` class to define partitions, so...

rbouckaert

Associate data with internal nodes via IDs

2

For fixed tree analysis or just for initialisation, it can be useful to have a starting tree where internal nodes are identiefied by a name instead of a number. Currently,...

rbouckaert

BEAGLE has gained quite a few more options, but controlling these is currently not supported. In particular, it can benchmark various BEAGLE instances (e.g. CPU vs GPU) and choose the...

rbouckaert

Loading of file.xml failed. Cannot read the array length because "this.patternIndex" is null.

1

I get the following error message whenever I create an .xml file in BEAUti and then I try to open it up again for further editing: Loading of file.xml failed:...

mrmancuso