beast2
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CompEvol
Bayesian Evolutionary Analysis by Sampling Trees
BactrianRandomWalkOperator should use "windowSize" not "scaleFactor". I have a chat with Remco about this, because it will affect all XMLs and BEAUti templates, it'd better to include it in a...
BEAST 2 version on bioconda is 2.6.3 see [anaconda site](https://anaconda.org/search?q=BEAST2). Current version of BEAST 2 is 2.7.7.
General catch all issue to deal with v2.7.8 release. Since this release will only affect a large number of minor fixes, a package release for BEAST.base and BEAST.app may suffice.
Hi, In continuous phylogeography, in this URL it is mentioned that: https://www.beast2.org/2022/03/01/phylogeography.html _"Also, it is possible to add priors that restrict the location of clade MRCAs, like the root location...
Dear @alexeid Today I need to use BEAST v2.7.7 to do some tasks but failed to open its interface. All exes, including BEAST.exe, BEAUTi.exe, LogCombiner.exe, TreeAnnotator.exe, except Densitree.exe, showed no...
Solution: normalise the input vector so that its components sum to 1. Compensate for the space reduction by adding a constant `log(sum)* (dimension-1)`.
It would be nice to use `Function` instead of `RealParameter` for all inputs of `SiteModel`, so that we could use `feast.function.Slice` in XML: ```java final public Input muParameterInput = new...
1. Import alignment `examples/nexus/Dengue4.env.nex`; 2. Check the Tip Date panel, it has nothing. The file has a "CALIBRATION" block: ```Nexus BEGIN CALIBRATION; OPTIONS SCALE = years; TIPCALIBRATION 94 = 1994:D4ElSal94,...
Hi I'm currently running into an issue with Beast 2.7.5 on a linux cluster. When run, it fails quickly with a java runtime error, ID'ing this as the problematic frame:...
Hello! I encountered an error when I tried to re-run an analysis with the Bactrian operator schedule. I managed to locate the cause of the error, which was this operator:...
