Cole Lyman

Thanks for trying the other branch, would you mind rerunning with the `--debug` flag and providing the output? With that I can hopefully debug where this is happening.

Thanks for the additional information and sorry for the delay in responding! As for the new error after you trim the soft-clipped reads, I have pushed a fix that will...

Hi @sgarudadri, Sorry to hear that you are running into this bug, could you also provide the version of pandas that you have installed? Thanks, Cole

Hi @sgarudadri, Yes, if you provide the sgRNA, then you should see the Allele Frequency plot show up! Thanks, Cole

Hi @olu2016, Good question, if you are only interested in looking at deletion frequency you can use the `--ignore_substitutions` and `--ignore_insertions` parameters and then only deletions inside the quantification window...

Hi @dmitrisvetlov, Thanks for using CRISPResso and sorry that you have had installation troubles. Would you be able to confirm that conda is indeed installing the latest version of CRISPResso...

I imagine this has to do with the Cython code that we use and the breaking changes of numpy v2. We have merged the compatibility fixes for numpy v2, are...

Thank for your comment and request @cdustinr. This is something that we are actively exploring and hope to implement (unfortunately I can't provide a timeline now). Others have found success...

Hi @nbruciaferri, Thanks for using CRISPResso and for submitting this bug! We unfortunately have not been able to reproduce it, would you mind sharing your batch file and the command...

Hi @nbruciaferri, Never mind, I was able to find a dataset that reproduced the error! And I think I have a fix for it. If you feel comfortable, could you...