Cole Lyman

On second thought, isn't this line only executed at runtime (it is inside the `main` function)? So we should be able to use `args.needleman_wunsch_aln_matrix_loc`, unless I'm missing something.

Thanks @tangxj98, this bug has been fixed and the fix will be available in the next release. If you want to have the fix now, you can clone the repo...

Thanks @tangxj98, would you mind making separate issues for 1 and 3? Also in those issues could you provide the output with the `--debug` flag? As for point 2, could...

Hi @tangxj98, Just wanted to follow up to see if you are still running into these issues, if so please let us know! Thanks, Cole

Hi @tanyasarkjain, Thanks for the question, you currently can't run CRISPRessoWGS on the entire genome. We recommend using [VarScan](http://dkoboldt.github.io/varscan/) or [MuTect](https://github.com/broadinstitute/mutect) to scan the entire genome, and then specifying the...

Sorry that you are running into this error, would you mind sharing the version of `numpy` you have installed? I think this may be due to having version 2.0.0 of...

Thanks, do you know what version of CRISPResso you have installed? It looks like the latest version (v2.3.1) has this bug fixed https://github.com/pinellolab/CRISPResso2/blob/master/CRISPResso2/CRISPRessoCORE.py#L3764 Please let us know if you still...

Hi @tangxj98, Thanks for letting us know, it has been updated on the installation page now! Thanks, Cole

Hi @niko-balanis, Thanks for using CRISPResso! Sorry to hear that you are running into this issue, would you mind checking which version you are running? If you are running any...

Hi @enc-kcotto, Thanks for using CRISPResso and sorry that you are running into this error. I am working on a fix and it will be included in the next release...