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Medical Concept Annotation Tool

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Python 3.8 is EoL since 7th of October. As such, it's time to stop support for it. That is what this PR does. It: - removes 3.8 from GitHub Actions...

Since #469 there's been a bit of an issue with preprocessing. Namely, it wasn't ignoring `UKClinicalRefsetsRF2` as it should have done. I have made the necessary change. The other small...

Hi guys, As [Pydantic V1 will probably reach end-of-life soon](https://github.com/pydantic/pydantic/discussions/7505) (and they [apparently promise there will be no more breaking changes](https://github.com/pydantic/pydantic/issues/10033), are there any plans for [Pydantic V2 support](https://docs.pydantic.dev/latest/version-policy/)? (I've...

Hello MedCAT team, The new model download authentication flow using medcat.sites.er.kcl.ac.uk/auth-callback currently results in a 404 due to NIH registration issues. Would it be possible to provide a temporary direct...

This change modifies the BERT model loading logic to support offline initialization from local files only, removing any dependency on online resources. New behavior: - If `load_bert_pretrained_weights=True`: load pretrained BERT...

enhancement