MedCAT
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CogStack
Medical Concept Annotation Tool
Hi! Is there a specific reason why the spacy version used by MedCAT is pinned to `
Hi @w-is-h , CUI filtering can be done at various stages during training and application of named entity linking, with different results. For a specific usecase I need to apply...
Add a usage monitor. What it does is monitor: - The input text length - The input preprocessed text length - The number of output entities The usage monitor is...
Separate config entries that only (truly) take effect if set before a model is loaded or initialised. Some of these config entries are used elsewhere in the codebase as well....
Let's see if we can do both pydantic 1 and pydantic 2. This _should_ in principle work with both. Though I don't want to run GHA for both all the...
Add a new step to GHA workflow that does the following: - Downloads all (fake) models for various versions - 1.2.9, 1.3.1, 1.4.1, 1.5.3, 1.6.1, 1.7.0, 1.8.0, 1.9.0, 1.10., 1.11.0,...
As per #467 Using a regular expression to capture the release from the folder name. Upon init, this check is non-strict (i.e no exception is raised if release is unable...
Due to changes in the naming convention of SNOMED CT release files. The date/release no longer fits these exact character range. https://github.com/CogStack/MedCAT/blob/96706c8a88ad0cf2df1a143311a5904d6d8a78ec/medcat/utils/preprocess_snomed.py#L80 Needs to be checked with different releases and...
Mypy update broke GHA. This PR will attempt a fix. First trivial change should result in failure. Second change to pinned version (to lower than 1.12) should result in successful...