Chi Liu

Hi. The import functions are all in the file2meco package (https://github.com/ChiLiubio/file2meco). However, there are currently no mature functions available to directly import MEGAN results into a microtable object. We will...

Hi. Could you please attach your data and the scripts so that I can reproduce your result? Please save your microtable object following the tutorial (https://chiliubio.github.io/microeco_tutorial/notes.html#save-function) and provide your lefse...

Hi. Please first adjust `use_taxa_num` parameter to 150 and try again. ``` g1

Hi Bruno, Could you please attach an example that I can reproduce to check how it is generated? It is greatly appreciated if the example data in the package can...

Hi. I donot know how the "Data without underscore" is generated. I see there is no species information in otu1.

Hi Bruno, Thanks. Could you please send me your original file to carefully check how it happens? I think it is better to send me the file via the email...

Please also attach your code that I can use to reproduce your result. Thanks.

Hi Bruno, I find the issue comes from the function `tidy_taxonomy`. The pattern parameter contains many regular expressions used to delete those useless taxonomic information. The default pattern parameter is...

Hi Alberto, Good suggestion! Do you mean some operations in alpha diversity like this: ``` data(dataset) t1

Yes. The bottomed function will run something like this ``` div_table