CellNet

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Can't download the reference example

5

 I can't download the reference example, and with bug information "You don’t have permission to get object details. After you or your AWS administrator have updated your permissions to...

zyb1984

HERE IS THE ERROR. Salmon and Cutadapt works fine but when i follow your protocol i keep getting this error. Please help me resolve this issue. determining read length Trimming...

wiafridi

Hi, I got the following error when I run cn_apply. Thanks. Error in predict.randomForest(classList[[ctt]], t(expDat[xgenes, ]), type = "prob") : number of variables in newdata does not match that in...

Jiangyuan-Liu

cn_salmon Error: cannot open compressed file 'geneToTrans_Homo_sapiens.GRCh38.80.exo_Jul_04_2015.R'

5

Thank you for developing CellNet. I am trying to apply CellNet to some of my RNAseq data following your Nature Protocol paper. And the R file named 'geneToTrans_Homo_sapiens.GRCh38.80.exo_Jul_04_2015.R' is needed...

Liang0328

Beg you to help us reconstruct GRNs

1

Hi Patrick, First, I really really really hope you could help me. For now, I am working on a research topic and want to use CellNet to access similarity of...

AIBio

cn_apply() Error in predict.randomForest

4

Hi Patrick, I am trying to apply my trained cnProc on my query data by the following piece of code: **cnRes

rebekabato

Error at step 8 of the PROCEDURE

1

Hi, I was trying to run locally the procedure (mouse example). I encountered the following error at step 8: > cnRes1

hoichman

cn_salmon

1

The error is below.I want to know how to solve it.Thank you. determining read length Trimming reads sh: 1: parallel: not found Salmon sh: 1: parallel: not found rm: cannot...

gloriafight

Example on running locally

1

Hi Patrick, I'm trying to get CellNet to work locally on my workstation, but I got error on step cn_salmon(stQuery) saying parrellel command not found. So I figured this step...

maximillo

Error in "cn_make_grn"

1

I'm trying to make cn_Proc with my own data which has 1 cell type and all have the same description. At the step to construct C/T-specific GRNs, it is throwing...

rajinder4489