Cyril Pernet
Cyril Pernet
i notice this warning for file name too long .. working on fixing that at some point , although it haven't failed for me? just warned
so error is unrelated to the warning - you can see the issue is when parsing the scan name @davidreydellet are you ok with a bit of coding? you could...
ok but it works in other BIDS datasets we tried, so we need to figure out why in your case, as this is not a tenable solution ; let me...
x likely empty??
@davidreydellet can you pull the updated version and see if setting options.reorient = 'off'; solves some of the problem @Remi-Gau options.reorient = 'off'; goes around issue https://github.com/CPernet/spmup/issues/5 while ultimately we...
is spmup autorient still a pblem? we could try Chris function https://github.com/hMRI-group/hMRI-toolbox/blob/master/hmri_autoreorient.m
let's try to use https://github.com/lrq3000/auto_acpc_reorient
+1 list of strings
I was updating my local code and realized that `_FA.nii[.gz]` is not in the list. Are there any reasons for that? (also what the scanner generates)
One small suggestion in the phrasing -- maybe it is worth avoiding using 'derivatives' to avoid confusion? `scanner-generated derivatives` -->` scanner-generated images` `such volumes SHOULD be derived from that series...