seqsender
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CDCgov
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Hi! I just found out about this fantastic submission pipeline you all built and I'm really excited to start using it. I had to make some updates since the majority...
Creating automated testing for script updates with drastically increase testing time. Testing is tedious when it depends on databases processing files to determine if the changes work correctly. Environment testing:...
I'm having another issue, which I suspect may be the result of my limited experience with docker... When I try and check the status of a submission, I get this...
- [x] check-submissions: Allow option to update a single submission instead of updating all submissions in log. - [x] **other organism: Allow any organism to be used with the flag...
Biosample packages can be incorporated into seqsender using the biosample attribute xml. It lists off the requirements for every biosample package and can be automated to regularly collect the most...
**Is your feature request related to a problem? Please describe.** Hard-coded date formatting at YYYY-MM-DD creates challenges for generalizing to other microbial pathogens, the majority of which must be submitted...
## Additional templates - [ ] **New contributor** - [ ] **Suggest new virus to support** ## Update existing templates - [ ] **Bug Report** - [ ] **Feature Request**...