MolecularNodes

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Currently a warning is printed `No MNSession found to load for this .blend file.` every time a .blend is opened, should disable this as it is unnecessary and only print...

BradyAJohnston

Formatting issues of the PDB file

1

I succeed to use the MolecularNodes to show the 4ozs.pdb in blender, it is so awesome !!!!! Then, I want to be take my file in the MolecularNodes, it seems...

hanjiahe1999

Relative path fails for opening local file

2

If opening local file, the relative paths fail to be parsed. This was fixed for MD simulation paths but hasn't been fixed for local PDB paths.

BradyAJohnston

When loading a starfile, the simplified version using the arrows isn't getting it's material assigned, so they are all grey when adding at the moment

BradyAJohnston

If style ribbon / cartoon is used on nucleic acids that don't have side chains, then the current styles still try to instance and rotate bases even though they shouldn't....

BradyAJohnston

Any online access should be limited behind `bpy.app.online_access`, which is a preference that allows for online access. https://docs.blender.org/manual/en/dev/advanced/extensions/addons.html#internet-access The only online access is currently downloading from the PDB. Any operators...

BradyAJohnston

Mesoscale cif and bcif clean-up

8

Use biotite cif and bcif parser Add support for some color file, as a json dictionary Need a patch on biotite to support YASARA petworld file ( attached ) [cif.txt](https://github.com/user-attachments/files/16535616/cif.txt)...

corredD

BradyAJohnston

Via MDAnalysis string selections are now possible, using the MDAnalysis selection language. Possibility to also port this to Molecules. Could be done by turning the molecule into a Universe on...

BradyAJohnston

Add an option to delete hydrogen from the Styles

3

Hello! I want to suggest a simple feature that allows us to hide/ignore hydrogen atoms in some representations (styles) instead of removing them when importing. Basically the idea is to...

julioarvellos