MolecularNodes

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Some node groups are not pre-defined, to allow for custom inputs such as a chain selection, chain color and other structure-specific nodes. This allows one chain selection node to have...

BradyAJohnston

Defaul Materials

2

Hi Brady, I would like to add a new Material called "MN AO Emission".  I use it a lot in my work, mostly because it makes renders work without...

jojoelfe

When importing a structure either locally or from the PDB, a potential option to remove hydrogens as most protein structures don't want to include hydrogens when visualising the structures.

BradyAJohnston

Documentation for starfiles

7

This should add the starfile node to the documentation. I am still working on the tutorial, but figured I open the PR to see if the CI for the docs...

jojoelfe

Read `.ndjson` CryoET Files

11

For instancing of particles, reads `.ndjson` files and creates points for instancing. Currently just the initial barebones importer which can parse the positions and the rotations for the points. Doesn't...

BradyAJohnston

Molecule class

10

Proposal for Issue #464 Changes: - abc for molecules - molecule classes that want to inherit from it require two methods: ```python @classmethod @abstractmethod def _get_structure(cls, fpath: str): ... @abstractmethod...

kainszs

add initiall install asset library button

1

Related to #465, this adds a button in the add-on preferences that the user can click to register the add-on's assets with Blender's asset library browser.  Allows for quicker...

BradyAJohnston

In the very early stages, but there is currently a new molecular dynamics database being built, modeled on the PDB. This will allow downloading and streaming of MD trajectories via...

BradyAJohnston

BUG: ValueError in npyio.py loading oxdna topology and trajectory

5

**Describe the bug** topology and trajectory created with recent version of oxDNA 3.6.1 does not load in MN **To Reproduce** [http://tacoxdna.sissa.it/XYZ_oxDNA] - generate test.oxdna using tacoxdna [https://lorenzo-rovigatti.github.io/oxDNA/relaxation.html] - First stage:...

alphataubio

Optimize molecule class

14

As described in the issues #454 and #459, the molecule class can be optimized and unified with the AtomGroupInBlender class. Goals: - [x] clean up s. #454 - [x] write...

kainszs