MolecularNodes

MolecularNodes copied to clipboard

Dynamic selections from MDAnalysis

4

Hi all, I have a question/request regarding selections in Molecular Nodes. We recently published a [MDAKit](https://github.com/BioMemPhys-FAU/domhmm) to identify domains in membranes. I think it would look cool to import the...

m-a-r-i-u-s

Error when importing local .CIF and .MOL file formats

1

I'm getting an error when I try to import a small molecule using the local method using a file format different from PDB. The CIF and MOL files were created...

julioarvellos

Blender 4.3 is adding integer math nodes. There are lots of places that currently use float math that could be replaced with integer math nodes to improve performance and accuracy

BradyAJohnston

If you import a structure from PDB, change it, then import the same structure, currently the node group is re-used but additional nodes are also created inside of it. Should...

BradyAJohnston

Currently every time we run `build.py`, even if on the same version, some of the installed versions update. This can break things if we are storing the versions in the...

BradyAJohnston

Currently the aromatic rings aren't picked up for the `Split` option for the bonds, should just need to update the selection to also include `bond_type == 6` The example video...

BradyAJohnston

Some Nodes missing Soft Limits

2

I accidentally noticed (after a crash) that some nodes have a resolution or quality input with no soft limits. I checked all the nodes from following categories: **Style** > Surface...

julioarvellos

VSCode development addon isue with extension?

2

I am having issues using the VSCode development addon with blender 4.2.1. The extension fails to activate because either 'starfile' or 'biotite' are not available. These should be installed through...

jojoelfe

If we move all the custom attributes that are currently computed and store them on the actual `AtomArray` or `Universe`, then we could just iterate through all attributes and add...

BradyAJohnston