steinbock

steinbock copied to clipboard

Add logging of steinbock commands

2

jwindhager

Add cellpose support

1

Maybe even with re-training?

jwindhager

Feature request: saving images in other file formats

5

This is more to track a discussion: Would you consider supporting the storage of images in other file formats, e.g. .h5? I'm just asking since `cytomapper` could directly link to...

nilseling

jwindhager

jwindhager

jwindhager

two sets of images with slightly different panels

3

Dear Team, I am analysing some IMC images using the steinbock platform. I have two sets of different images with panels that are 99% the same, the only difference being...

Will760

updates: - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0) - [github.com/psf/black: 24.3.0 → 24.4.0](https://github.com/psf/black/compare/24.3.0...24.4.0)

pre-commit-ci[bot]

issue of Segmentation fault

1

I have a big tiff (19755x14552 ) for the segmentation. I met issue of "out of memory". I have 1Tb memory for my Linux server. Below is the error info:...

dingxm

Develop

5

- `Cellpose` added as an app ( `steinbock/_cli/apps.py `). - `Cellpose` model training added (`steinbock/segmentation/_cli/train.py', 'steinbock/segmentation/train.py`, 'Steinbock/segmentation/_cli/_cli.py'). - `Cellpose` default parameters changed (`steinbock/segmentation/cellpose.py`). - `Cellpose` model zoo added (`steinbock/segmentation/_cli/cellpose.py`). -...

Milad4849