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issue of Segmentation fault

Open dingxm opened this issue 10 months ago • 1 comments

I have a big tiff (19755x14552 ) for the segmentation. I met issue of "out of memory". I have 1Tb memory for my Linux server. Below is the error info: /app/entrypoint.sh: line 3: 13 Segmentation fault (core dumped) python -m steinbock "$@" Is there anyway I can change some parameter that the deepcell step will use less memory. For example change the number of thread. Thanks

dingxm avatar Apr 09 '24 20:04 dingxm

Hi @dingxm You cannot specify such a parameter via steinbock. I think your best bet is to try deepcell tiling directly (not via steinbock). Steinbock is primarily designed to handle imc images and not images of the size that you have.

Milad4849 avatar Apr 09 '24 21:04 Milad4849